国立大学法人東海国立大学機構 岐阜大学 応用生物科学部

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植物病理学研究室

トップページ 植物病理学研究室 研究業績

研究業績

原著論文・著書

2023

  • 清水将文（2023）発病抑止力を高めるための土壌微生物叢の改善－土着拮抗微生物を活かした土壌病害防除－，作物生産と土づくり　Vol. 55: 14 －18.

2022

  • Nishioka, T., Suga, H. and Shimizu, M. The stimulation of indigenous bacterial antagonists by γ-glutamyl-S-allyl-L-cysteine increases soil suppressiveness to Fusarium wilt. Applied and Environmental Microbiology (doi.org/10.1128/aem.01554-22)

  • FangJing Li, Akio Ebihara, Yuri Sakahara, Sarara Matsumoto, Reina Ueno, WanXue Bao, Makoto Kimura, Shin-ichi Fuji, Masafumi Shimizu, Koji Kageyama and Haruhisa Suga. Synergistic effect of amino acid substitutions in CYP51B for prochloraz resistance in Fusarium fujikuroi. Pesticide Biochemistry and Physiology, Volume 189, 2023, 105291 (doi.org/10.1016/j.pestbp.2022.105291)

  • Shimizu, M., Naznin, H.A. and Hieno, A. (2022) The significance of mycoparasitism by Streptomyces sp. MBCN152-1 for its biocontrol activity against Alternaria brassicicola. Microbes Environ. 37: ME22048, doi: 10.1264/jsme2

  • Suga, H., Hayashi, M., Kushiro, M., Miyano, N., Inoue, H., Nakajima, K., Kawakami, T., Tonooka, T., Nakajima, T., Shimizu, M. and Kageyama, K.: A novel medium for isolating two Japanese species in the Fusarium graminearum species complex and a dipstick DNA chromatography assay for species identification and trichothecene typing. J. Fungi 8, 1048. https://doi.org/10.3390/jof8101048, 2022
  • Fang Jing Li, Ryoji Komura, Chiharu Nakashima, Masafumi Shimizu, Koji Kageyama, and Haruhisa Suga (2022) Molecular Diagnosis of Thiophanate-Methyl-Resistant Strains of Fusarium fujikuroi in Japan. Plant Dis. 2022 106:634-640 https://doi.org/10.1094/PDIS-07-21-1501-RE
  • 西岡友樹・清水将文（2022）土壌病害防除のための微生物叢改変技術－土壌病害に強い微生物叢をつくるー．化学と生物　60（4）182‐188.

2021

  • Ahsan N., Marian M., Suga H. and Shimizu M. (2021) Lysinibacillus xylanilyticus strain GIC41 as a potential plant biostimulant. Microbes Environ. 2021;36(4). doi: 10.1264/jsme2.ME21047. PMID: 34744143.
  • Suga, H., Okumura, R., Ikawa, M., Shimizu, M., & Kageyama, K. A natural two‐nucleotide deletion affirm role for NADPH oxidase in pathogenicity and perithecium formation in Fusarium graminearum species complex. Plant Pathology DOI: 10.1111/ppa.13499
  • 清水将文（2021）植物病理学分野における土壌・植物微生物研究の現状と病害防除への応用展開．特集「持続的農業のための土壌・植物微生物叢の解析と利用」，アグリバイオ vol.5 (1): 28-32.
  • Sultana S., Bao W.X., Shimizu M., Kageyama K. and Suga H. (2021) Frequency of three mutations in the fumonisin biosynthetic gene cluster of Fusarium fujikuroi that are predicted to block fumonisin production. World Mycotoxin Journal 14: 49-59.
  • Malek Marian, Takashi Fujikawa, Masafumi Shimizu (2021) Genome analysis provides insights into the biocontrol ability of Mitsuaria sp. strain TWR114. Archives of Microbiology https://doi.org/10.1007/s00203-021-02327-1. (SharedIt link: https://rdcu.be/ci4Zf)
  • Nusrat Ahsan and Masafumi Shimizu (2021) Lysinibacillus Species: Their Potential as Effective Bioremediation, Biostimulant, and Biocontrol Agents. Reviews in Agricultural Science, 9: 103-116 (https://dx.doi.org/10.7831/ras.9.0_103)

2020

  • WX Bao, S Inagaki, S Tatebayashi, S Sultana, M Shimizu, K Kageyama and H Suga (2020) Expression difference of P450-1 and P450-4 between G-and F-groups of Fusarium fujikuroi. European Journal of Plant Pathology, https://doi.org/10.1007/s10658-020-02133-3
  • Hui-Zhen Fu, Malek Marian, Takuo Enomoto, Haruhisa Suga, and Masafumi Shimizu (2020) Potential Use of L-arabinose for the Control of Tomato Bacterial Wilt. Microbes and Environments 35(4), doi:10.1264/jsme2.ME20106 （2020年度Microbes and Environments誌論文賞選考委員会推薦優秀論文）
  • Hui-Zhen Fu, Malek Marian, Takuo Enomoto, Ayaka Hieno, Hidemasa Ina, Haruhisa Suga, and Masafumi Shimizu (2020) Biocontrol of Tomato Bacterial Wilt by Foliar Spray Application of a Novel Strain of Endophytic Bacillus sp.Microbes and Environments 35(4), doi:10.1264/jsme2.ME20078
  • Marian M., Ohno T., Suzuki H., Kitamura H., Kuroda K. and Shimizu M. (2020) A novel strain of endophytic Streptomyces for the biocontrol of strawberry anthracnose caused by Glomerella cingulata. Microbiological Research 234 (2020) 126428. https://doi.org/10.1016/j.micres.2020.126428
  • 清水将文（2020）欧州における微生物防除剤開発の動向，特集１　食と農の明るい未来に向けて，土づくりとエコ農業　Vol.52 No.555 pp.2-5.
  • Mohsen Mohamed Elsharkawy, Haruhisa Suga and Masafumi Shimizu (2020) Systemic resistance induced by Phoma sp. GS8-3 and nanosilica against Cucumber mosaic virus. Environmental Science and Pollution Research 27:19029-19037. https://doi.org/10.1007/s11356-018-3321-3
  • WanXue Bao, Takuya Nagasaka, Shin Inagaki, Sho Tatebayashi, Iori Imazaki, Shin-ichi Fuji, Takashi Tsuge, Masafumi Shimizu, Koji Kageyama,Haruhisa Suga (2020) A single gene transfer of gibberellin biosynthesis gene cluster increases gibberellin production in a Fusarium fujikuroi strainwith gibberellin low producibility. Plant Pathology DOI: 10.1111/ppa.13176

2019

  • 清水将文（2019）発病抑止土壌とは何か 古今東西の研究から，現代農業10月号 pp. 83-85.
  • Malek Marian and Masafumi Shimizu (2019) Improving performance of microbial biocontrol agents against plant diseases. Journal of General Plant Pathology doi.org/10.1007/s10327-019-00866-6
  • 清水将文（2019）ホウレンソウの萎凋病　ウネ肩にネギを植えて抑える，困った病害虫相談室，現代農業６月号 pp. 122-123.
  • Sharmin Sultana, Miha Kitajima, Hironori Kobayashi, Hiroyuki Nakagawa, Masafumi Shimizu, Koji Kageyama and Haruhisa Suga (2019) A natural variation of fumonisin gene cluster associated with fumonisin production difference in Fusarium fujikuroi. Toxins, 11, 200; doi:10.3390/toxins11040200
  • Tomoki Nishioka, Malek Marian, Issei Kobayashi, Yuhko Kobayashi, Kyosuke Yamamoto, Hideyuki Tamaki, Haruhisa Suga and Masafumi Shimizu (2019) Microbial basis of Fusarium wilt suppression by Allium cultivation. Scientific Reports 9:1715 (doi.org/10.1038/s41598-018-37559-7)
  • Malek Marian, Akio Morita, Hiroyuki Koyama, Haruhisa Suga and Masafumi Shimizu (2019) Enhanced biocontrol of tomato bacterial wilt using the combined application of Mitsuaria sp. TWR114 and nonpathogenic Ralstonia sp. TCR112. Journal of General Plant Pathology 85: 1-13. （Award for Paper of excellence，令和２年度論文賞受賞）
  • Haruhisa Suga, Mitsuhiro Arai, Emi Fukasawa, Keiichi Motohashi, Hiroyuki Nakagawa, Hideaki Tateishi, Shin-ichi Fuji, Masafumi Shimizu, Koji Kageyama, Mitsuro Hyakumachi (2019) Genetic differentiation associated with fumonisin and gibberellin production in Japanese Fusarium fujikuroi. Applied and Environmental Microbiology 85 Issue 1 e02414-18
  • Masanto, Hieno A., Wibowo A., Subandhiyah S., Shimizu M., Suga H. and Kageyama K. (2019) Genetic diversity of Phytophthora palmivora isolates from Indonesia and Japan using rep-PCR and microsatellite markers. Journal of General Plant Pathology 85: 367-381.

2018

  • Malek Marian, Tomoki Nishioka, Hiroyuki Koyama, Haruhisa Suga, and Masafumi Shimizu (2018) Biocontrol potential of Ralstonia sp. TCR112 and Mitsuaria sp. TWR114 against tomato bacterial wilt. Applied Soil Ecology 128: 71-80.
  • Tomoki Nishioka, Chihiro Tanaka, Malek Marian1, Yasuhiro Igarashi, Haruhisa Suga, Masafumi Shimizu (2018) Role of Burkholderia-derived pyochelin in the Fusarium wilt suppression of Allium-cultivated soil. IOBC-WPRS Bulletin 133: 130-131.
  • Malek Marian, Tomoki Nishioka, Hiroyuki Koyama, Haruhisa Suga, Masafumi Shimizu (2018) Novel isolates of Ralstonia and Mitsuaria species
    as biocontrol agents for controlling tomato bacterial wilt. IOBC-WPRS Bulletin 133: 9-10.
  • Dandan Li, Naoya Oku, Atsumi Hasada, Masafumi Shimizu and Yasuhiro Igarashi (2018) Two new 2-alkylquinolones, inhibitory to the fish skin ulcer pathogen Tenacibaculum maritimum, produced by a rhizobacterium of the genus Burkholderia sp. Beilstein Journal of Organic Chemistry 14: 1446-1451.
  • 清水将文（2018）ネギ類の混植によるホウレンソウ萎凋病の抑制．植物防疫　72巻第7号：418－421．
  • 清水将文（2018）植物内生放線菌による植物病害の生物防除．特集／微生物の農業利用、アグリバイオ　第2巻第2号：22－25.

2017

  • 清水将文（2017）植物生育促進微生物の働き．食と微生物の事典（北本勝ひこ他編）、朝倉書店、pp. 402-403.
  • 五十嵐千佳、浅野雄二、西岡友樹、須賀晴久、百町満朗、清水将文．ネギ類の混植によるホウレンソウ萎凋病の抑制．日本植物病理学会報 83: 87-94.
  • Hassan N., Nakasuji S., Elsharkawy M.M., Naznin H.A., Kubota M., Ketta H. and Shimizu M. (2017) Biocontrol potential of an endophytic Streptomyces sp. strain MBCN152-1 against Alternaria brassicicola on cabbage plug seedlings. Microbes and Environments 32: 133-141.（2017年度Microbes and Environments誌論文賞選考委員会推薦優秀論文）

2016

  • Nishioka T, Elsharkawy MM, Suga H, Kageyama K, Hyakumachi M and Shimizu M. (2016) Development of Culture Medium for the Isolation of Flavobacterium and Chryseobacterium from Rhizosphere Soil. Microbes and Environments 31: 104-110.（2016年度Microbes and Environments誌論文賞選考委員会推薦優秀論文）
  • Fujimori, N., Enoki, S., Suzuki, A., Naznin, H.A., Shimizu, M. and Suzuki, S. (2016) Grape apoplasmic B-1,3-glucanase confers fungal disease resisitance inArabidopsis. Scientia Horticulturae 200:105-110.
  • Suga, H., Kageyama, K., Shimizu, M. and Hyakumachi, M.（2017）A natural mutation involving both pathogenicity and perithecium formation in the Fusarium graminearum species complex. G3: Genes Genomes Genetics 6: 3883-3892
  • 清水将文（2016）ヨーロッパにおける微生物農薬開発研究の現状．バイオコントロール研究会レポート．14:11-18
  • 澤木克亘，佐伯裕作，清水将文，小林佑理子，小山博之（2016） Penicillium pinophilum接種によるシロイヌナズナの病害抵抗誘導性の評価. 無菌生物 46: 75-78

2015

  • Mohsen Mohamed Elsharkawy, Mai Nakatani, Mitsuyoshi Nishimura, Tatsuyuki Arakawa, Masafumi Shimizu and Mitsuro Hyakumachi. (2015) Suppression of rice blast, cabbage black leaf spot and tomato bacterial wilt diseases by Meyerozyma guilliermondii TA-2 and the nature of protection. Acta Agriculturae Scandinavica, Section B -- Soil & Plant Science 65:629-636.
  • Mohsen Mohamed Elsharkawy, Tatsuya Hase, Yusuke Yagi, Masafumi Shimizu and Mitsuro
    Hyakumachi (2015) Induction of systemic resistance against Fusarium crown and root rot disease by blast processing. Journal of Plant Interactions (DOI: http://dx.doi.or/10.1080/17429145.2015.1066038)
  • Elsharkawy, M.M., Nakatani, M., Nishimura, M., Arakawa, T., Shimizu, M. and Hyakumachi, M. (2015) Control of tomato bacterial wilt and root-knot diseases by Bacillus thuringiensis CR-371 and Streptomyces avermectinius NBRC14893. Acta Agriculturae Scandinavica, Section B -- Soil & Plant Science (DOI:10.1080/09064710.2015.1031819)
  • Nishioka, T., Suzuki, Y., Suga, H., Kobayashi, I., Kobayashi, Y., Hyakumachi, M. and Shimizu, M. (2016) Metagenomic analysis of bacterial flora in rhizospheres of Allium plants and suppressive activity of Pseudomonas isolates against Fusarium wilt of cucumber. IOBC-WPRS Bull. 115: 107-111

2014

  • Mohsen Mohamed Elsharkawy, Tatsuya Hase, Masafumi Shimizu and Mitsuro Hyakumachi (2014) Suppressive effects of a polymer sodium silicate
    solution on powdery mildew and root rot diseases of miniature rose. African Journal of Biotechnology 14: 2917-2927.
  • Marian, K., Ogawa, K., Yoshikawa, Y., Takasaki, S., Usami, A., Shimizu, M., Miyazawa, M and Hyakumachi, M. (2014) Agroecosystem development of industrial waste - Suppressive effects of beer yeast cell wall extract on plant diseases. Current Environmental Engineering 1: 207-211.
  • Khedr, A.A., Mehiar, F., El-Kady, S.M., Gabr, M.A., Elsharkawy, M.M. and Shimizu, M. (2014) Serological characteristics of Erwinia carotovora isolated from potato fields in Egypt. Plant Pathol J 13: 246-256.
  • Hassan, N., Elsharkawy, M.M., Shimizu, M. and Hyakumachi M. (2014) Control of Root Rot and Wilt Diseases of Roselle under Field Conditions. Mycobiology 42:376-84.
  • Hassan, N., Shimizu, M. and Hyakumachi, M. (2014). Occurrence of root rot and vascular wilt diseases in roselle (Hibiscus sabdariffa L.) in upper Egypt. Mycobiology 42: 66-72. (doi:10.5941/MYCO.2014.42.1.00)
  • Suga, H., Kitajima, M., Nagumo, R., Tsukiboshi, T., Uegaki, R., Nakajima, T., Kushiro, M., Nakagawa, H., Shimizu, M., Kageyama, K. and Hyakumachi, M. (2014). A single nucleotide polymorphism in the translation elongation factor 1α gene correlates with the ability to produce fumonisin in Japanese Fusarium fujikuroi. Fungal Biol (in press) doi:10.1016/j.funbio.2014.02.005
  • Hossain, M.M., Sultana, F., Miyazawa, M. and Hyakumachi, M. (2014). The plant growth-promoting fungus Penicillium spp. GP15-1 enhances growth and confers protection against damping-off and anthracnose in the cucumber. J Oleo Sci ( in press).
  • Hyakumachi, M., Mondal, S.N., Elsharkawy, M.M. and Hassan, N. (2014). Carbon loss by sclerotia of Sclerotium rolfsii under the influence of soil pH, temperature and matric potential and its effect on sclerotial germination and virulence. Appl Soil Ecol 77,34-41.
  • Elsharkawy, M.M., Hassan, N., Villajuan-Abgona, R. and Hyakumachi, M. (2014). Mechanism of Biological control of Rhizoctonia damping-off of cucumber by a non-pathogenic isolate of binucleate Rhizoctonia. Afric J Biotech 13,640-650.
  • Elsharkawy, M.M., Hassan, N., Ali, M., Mondal, S.N. and Hyakumachi, M. (2014). Effect of zoysiagrass rhizosphere fungal isolates on disease suppression and growth promotion of rice seedlings. Acta Agri Scand, Sect B (in press) doi:10.1080/09064710.2014.888470.
  • Naznin, H.A., Kiyohara, D., Kimura, M., Miyazawa, M., Shimizu, M., and Hyakumachi, M. (2014). Systemic resistance induced by volatile organic compounds emitted by plant growth-promoting fungi in Arabidopsis thaliana. PLoS ONE (in press). Doi:10.1371/journal.pone.0086882
  • Takahashi, H., Nakaho, K., Ishihara, T., Ando, S., Wada, T., Kanayama, Y., Asano, S., Yoshida, S., Tsushima, S., and Hyakumachi, M. (2014). Transcriptional profile of tomato roots exhibiting Bacillus thuringiensis-induced resistance to Ralstonia solanacearum. Plant Cell Rep (in press). doi:10.1007/s00299-013-1515-1.
  • Hieno, A., Naznin, H.A., Hyakumachi, M., Sakurai, T., Tokizawa, M., Koyama, H., Sato, N., Nishiyama, T., Hasebe, M., Zimmer, A.D., Lang, D., Reski, R., Rensing, S.A., Obokata, J., and Yamamoto, Y.Y. (2014). ppdb: plant promoter database version 3.0. Nucleic Acids Res D1188-1192. doi:10.1093/nar/gkt1027
  • Saldajeno, M.G.S., Naznin, H.A., Elsharkawy, M.M., Shimizu, M. and Hyakumachi, M. (2014). Enhanced resistance of plants to disease using Trichoderma spp. In Biotechnology and Biology of Trichoderma. (Eds. Gupta, V.K., et al.) . Elsevier, Amsterdam. pp.477-493.

2013

  • Elsharkawy, M.M., Shimizu, M., Takahashi, H., Ozaki, K., and Hyakumachi, M.(2013). Induction of systemic resistance against Cucumber mosaic virus in Arabidopsis thaliana by Trichoderma asperellum SKT-1. Plant Pathol J 29, 193-200. doi:10.5423/PPJ.SI.07.2012.0117.
  • Hieno, A., Naznin, H.A., Sawaki, K., Koyama, H., Sakai, Y., Ishino, H., Hyakumachi, M., and Yamamoto, Y.Y. (2013a). Analysis of environmental stress in plants with the aid of marker genes for H2O2 responses. Methods Enzymol 527, 221-237. doi:10.1016/B978-0-12-405882-8.00012-X.
  • Hyakumachi, M. (2013). Research on biological control of plant diseases: present state and perspectives. J Gen Plant Pathol 79, 435-440. doi:10.1007/s10327-013-0484-0.
  • 百町満朗. (2013). 生物防除研究の現状と展望. Jpn J Phytopathol 79, 123-127
  • Hyakumachi, M., Nishimura, M., Arakawa, T., Asano, S., Yoshida, S., Tsushima, S., and Takahashi, H. (2013). Bacillus thuringiensis suppresses bacterial wilt disease caused by Ralstonia solanacearum with systemic induction of defense-related gene expression in tomato. Microbes Environ 28, 128-134. doi:10.1264/jsme2.ME12162.
  • Kojima, H., Hossain, M.M., Kubota, M., and Hyakumachi, M. (2013). Involvement of the salicylic acid signaling pathway in the systemic resistance induced in Arabidopsis by plant growth-promoting fungus Fusarium equiseti GF19-1. J Oleo Sci 62, 415-426. doi:10.5650/jos.62.415.
  • Naznin, H.A., Kimura, M., Miyazawa, M., and Hyakumachi, M. (2013). Analysis of volatile organic compounds emitted by plant growth-promoting fungus Phoma sp. GS8-3 for growth promotion effects on tobacco. Microbes Environ 28, 42-49. doi:10.1264/jsme2.ME12085.
  • Qu, P., Saldajeno, M.G., and Hyakumachi, M. (2013). Mechanism of the generation of new somatic compatibility groups within Thanatephorus cucumeris (Rhizoctonia solani). Microbes Environ 28, 325-335. doi:10.1264/jsme2.ME12214.
  • Shimizu, K., Hossain, M.M., Kato, K., Kubota, M., and Hyakumachi, M. (2013). Induction of defense responses in cucumber plants by using the cell-free filtrate of the plant growth-promoting fungus Penicillium simplicissimum GP17-2. J Oleo Sci 62, 613-621. doi:0.5650/jos.62.613.
  • Suga, H., Hirayama, Y., Morishima, M., Suzuki, T., Kageyama, K., and Hyakumachi, M. (2013). Development of PCR primers to identify Fusarium oxysporum f. sp. fragariae. Plant Dis 97, 619-625. doi:10.1094/PDIS-07-12-0663-RE.
  • 清水将文（2013）第20章　各種微生物を用いた生物防除　20-2　放線菌，土壌微生物実験法　第3版（日本土壌微生物学会編），養賢堂，pp.225-229.
  • 百町満朗 （2013）. 植物生育促進菌類．「菌類の事典」（日本菌学会編），朝倉書店，東京．pp.317-318.
  • Saldajeno, M.G.S., Elsharkawy, M.M., Chandanie, W.A., Ito, M., Shimizu, M. and Hyakumachi, M. (2013). Enhanced resistance due to the simultaneous application of plant growth-promoting fungi (PGPF) and arbuscular mycorrhizal fungus (AMF) in cucumber. In: Induced resistance in plants against insects and diseases. IOBC-WPRS Bulletin. 89:161-164.
  • Naznin, H.A., Kiyohara, D., Kimura, M., Miyazawa, M., Shimizu, M. and Hyakumachi, M. (2013). Systemic resistance induced by volatile substances produced by PGPF in Arabidopsis plants. In: Induced resistance in plants against insects and diseases. IOBC-WPRS Bulletin. 89:141-144.
  • Yoshida, S., Takahashi, H., Nakaho, K., Ishihara, T., Ando, S., Kanayama, Y., Tsushima, S. and Hyakumachi, M. (2013). Transcriptional profile of tomato roots exhibiting Bacillus thuringiensis-induced resistance to Ralstonia solanacearum. In : Induced resistance in plants against insects and diseases. IOBC-WPRS Bulletin. 89:73-77.
  • Yoshioka, Y., Naznin, H.A., Hieno, A., Shimizu, M., Hyakumachi, M. and Yamamoto, Y.Y. (2013). Prediction of transcriptional regulatory elements for systemic resistance induced by a plant growth promoting fungus Penicillium simplicissimum GP17-2 based on microarray data. In: IOBC-WPRS Bulletin. 86:313-317.
  • Shimizu, M., Hyakumachi, M., Kubota, M. and Kuroda, K. (2013). Biocontrol of Alternaria brassicola on cabbage seedlings and Glomerella cingulata on strawberry seedlings by endophytic Streptomyces spp. In: IOBC-WPRS Bulletin. 86:213-218.
  • Suzuki, Y., Shimizu, M. and Hyakumachi, M. (2013). Population of antagonistic actinomyces and bacteria against Fusarium oxysporum in the rhizosphere of cucumber and Welsh onion. In: IOBC-WPRS Bulletin. 86:187-188.
  • Elsharkawy, M.M., Hossain, M.M., Shimizu, M. and Hyakumachi, M. (2013). Induction of systemic resistance against Cucumber mosaic virus and bacterial speck pathogen by Penicillium simplicissimum GP17-2 in Arabidopsis and tobacco. In: IOBC-WPRS Bulletin. 86:177-184.t insects and diseases. IOBC-WPRS Bulletin. 89:161-164.

学会発表

2015

  • 日本植物病理学会大会（東京）で発表
  • 日本土壌微生物学会平成27年度大会（つくば）で発表
  • 共生微生物利用の未来（富山）で招待講演
  • 他

2014

  • IOBC（国際生物防除学会、スウェーデン）で発表
  • 日本植物病理学会大会（北海道）で発表
  • 日本植物病理学会関西部会（富山）で発表

2013

  • IOBC（国際生物防除学会、フランス）で3題発表

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